Identification of Proteolytic and Pectinolytic Yeasts from Civet (Paradoxorus hermaphroditus) and Evaluation of their Potential to Modify Coffee Bean Quality

Murna Muzaifa, Cut Nilda, - Rasdiansyah, Faidha Rahmi

Abstract


Civet coffee is one of the world’s most popular and expensive coffee types. The problem recently is the difficulty of finding natural civet coffee. The study of artificial civet coffee production using microorganisms to ferment the coffee in recent years has attracted the attention of many researchers. This study aims to characterize and identify yeast from civets and evaluate its potential as a starter in coffee fermentation. Three types of yeast isolated from civet feces have been isolated and characterized. They have varied morphological and biochemical characteristics. Only two yeast isolates Kh1 and Kh2 have the potential to be used as starters in fermentation due to the ability to degrade pectin and protein. The 18S rRNA gene fragment analysis results indicated that the isolates Kh1 and Kh2 were identified as Trichosporon asahii isolate E22922_ITS and Wickerhamomyces anomalus CNRMA10.1139. Applying both isolates as starters in coffee fermentation can improve the quality of coffee flavor and produce a higher score. Fermented coffee using W. anomalus starter provides more flavor, aftertaste, body, and overall advantages, while coffee fermentation using T. asahii isolate gives more value to the aroma. The highest cupping score was obtained for processed coffee using W. anomalus, reaching 84.42. Furthermore, it is necessary to carry out a more complex metabolite analysis to ensure the performance of the two isolates in modifying the chemical composition and taste of coffee.

Keywords


Civet; coffee bean; fermentation; molecular identification; yeast

Full Text:

PDF

References


M. Muzaifa, D. Hasni, A. Patria, and A. Abubakar, “Chemical composition of green and roasted coffee bean of Gayo arabica civet coffee (kopi luwak),†in IOP Conference Series: Earth and Environmental Science, 2020, vol. 425, no. 1, p. 12001.

M. Muzaifa, “Kualitas kopi luwak dan potensi produksinya secara mikrobiologis,†Universitas Syiah Kuala, 2020.

H. Watanabe, C. H. Ng, V. Limviphuvadh, S. Suzuki, and T. Yamada, “Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak,†PeerJ, vol. 8, p. e9579, 2020.

J. Raman et al., “Application of lactic acid bacteria (LAB) in sustainable agriculture: Advantages and limitations,†Int. J. Mol. Sci., vol. 23, no. 14, p. 7784, 2022.

H. Elhalis, J. Cox, and J. Zhao, “Coffee fermentation: Expedition from traditional to controlled process and perspectives for industrialization,†Appl. Food Res., p. 100253, 2022.

L. L. Ruta and I. C. Farcasanu, “Coffee and yeasts: From flavor to biotechnology,†fermentation, vol. 7, no. 1, p. 9, 2021.

G. V. de Melo Pereira et al., “Isolation, selection and evaluation of yeasts for use in fermentation of coffee beans by the wet process,†Int. J. Food Microbiol., vol. 188, pp. 60–66, 2014.

W. D. Black, “A comparison of several media types and basic techniques used to assess outdoor airborne fungi in Melbourne, Australia,†PLoS One, vol. 15, no. 12, p. e0238901, 2020.

Y. S. Yuma, “Isolation and characterization of yeast as potential probiotics from fermented cereals dough,†J. Vet. Med. Res., vol. 7, no. 6, pp. 1–7, 2020.

M. L. Raymond Eder, C. Reynoso, S. C. Lauret, and A. L. Rosa, “Isolation and identification of the indigenous yeast population during spontaneous fermentation of Isabella (Vitis labrusca L.) grape must,†Front. Microbiol., vol. 8, p. 532, 2017.

S. C. A. of A. (SCAA), “Protocol and best practices.â€

S. Maicas, “The role of yeasts in fermentation processes,†Microorganisms, vol. 8, no. 8. MDPI, p. 1142, 2020.

D. S. Laman Trip, T. Maire, and H. Youk, “Slowest possible replicative life at frigid temperatures for yeast,†Nat. Commun., vol. 13, no. 1, p. 7518, 2022.

C. Segal-Kischinevzky et al., “Yeasts inhabiting extreme environments and their biotechnological applications,†Microorganisms, vol. 10, no. 4, p. 794, 2022.

J. C. Perez, “Fungi of the human gut microbiota: Roles and significance,†Int. J. Med. Microbiol., vol. 311, no. 3, p. 151490, 2021.

F. Zhang, D. Aschenbrenner, J. Y. Yoo, and T. Zuo, “The gut mycobiome in health, disease, and clinical applications in association with the gut bacterial microbiome assembly,†The Lancet Microbe, 2022.

L. Feng et al., “Visual Identification of Trichosporon asahii, a Gut Yeast Associated with Obesity, Using an Enzymatic NIR Fluorescent Probe,†Anal. Chem., vol. 94, no. 32, pp. 11216–11223, 2022.

G. Castano, S. N. S. Yarrarapu, and P. K. Mada, “Trichosporonosis,†2018.

B. Padilla, J. V Gil, and P. Manzanares, “Challenges of the non-conventional yeast Wickerhamomyces anomalus in winemaking,†fermentation, vol. 4, no. 3, p. 68, 2018.

I. Ricci et al., “The yeast Wickerhamomyces anomalus (Pichia anomala) inhabits the midgut and reproductive system of the Asian malaria vector Anopheles stephensi,†Environ. Microbiol., vol. 13, no. 4, pp. 911–921, 2011.

B. J. O Efiuvwevwere, F. S Ire, and M. M. Umokaso, “Phenotypic and Genotypic Characterization of Lactic Acid Bacteria and Yeasts Involved in Spontaneous Fermentation of ‘Ogi’, A Cereal-porridge Produced in Nigeria,†J. Adv. Microbiol., pp. 13–28, 2022.

W. Wang, G. Fan, X. Li, Z. Fu, X. Liang, and B. Sun, “Application of Wickerhamomyces anomalus in simulated solid-state fermentation for Baijiu production: changes of microbial community structure and flavor metabolism,†Front. Microbiol., vol. 11, p. 598758, 2020.

M. Haile and W. H. Kang, “Antioxidant properties of fermented green coffee beans with Wickerhamomyces anomalus (Strain KNU18Y3),†fermentation, vol. 6, no. 1, p. 18, 2020.

L. Chen, D. Li, L. Ren, S. Song, X. Ma, and Y. Rong, “Effects of simultaneous and sequential cofermentation of Wickerhamomyces anomalus and Saccharomyces cerevisiae on physicochemical and flavor properties of rice wine,†Food Sci. Nutr., vol. 9, no. 1, pp. 71–86, 2021.

S.-B. Lee and H.-D. Park, “Isolation and investigation of potential non-Saccharomyces yeasts to improve the volatile terpene compounds in Korean Muscat Bailey A wine,†Microorganisms, vol. 8, no. 10, p. 1552, 2020.

J. Wang et al., “Comparison of potential Wickerhamomyces anomalus to improve the quality of Cabernet Sauvignon wines by mixed fermentation with Saccharomyces cerevisiae,†LWT, vol. 173, p. 114285, 2023.

R. Mahingsapun et al., “Enhancement of Arabica coffee quality with selected potential microbial starter culture under controlled fermentation in wet process,†Food Biosci., vol. 48, p. 101819, 2022.

H. Elhalis, J. Cox, D. Frank, and J. Zhao, “Microbiological and biochemical performances of six yeast species as potential starter cultures for wet fermentation of coffee beans,†LWT, vol. 137, p. 110430, 2021.

S. Krajangsang et al., “Enhancement of Arabica Coffee Quality with Selected Potential Microbial Seed Culture Under Controlled Fermentation in Wet Process,†Available SSRN 4008103, 2022.

M. Haile and W. H. Kang, “The role of microbes in coffee fermentation and their impact on coffee quality,†J. Food Qual., vol. 2019, 2019.

V. Osorio Pérez, L. G. Matallana Pérez, M. R. Fernandez-Alduenda, C. I. Alvarez Barreto, C. P. Gallego Agudelo, and E. C. Montoya Restrepo, “Chemical composition and sensory quality of coffee fruits at different stages of maturity,†Agronomy, vol. 13, no. 2, p. 341, 2023.

M. C. B. da Mota, N. N. Batista, M. H. S. Rabelo, D. E. Ribeiro, F. M. Borém, and R. F. Schwan, “Influence of fermentation conditions on the sensorial quality of coffee inoculated with yeast,†Food Res. Int., vol. 136, p. 109482, 2020.

S. E. Yeager, M. E. Batali, J.-X. Guinard, and W. D. Ristenpart, “Acids in coffee: A review of sensory measurements and meta-analysis of chemical composition,†Crit. Rev. Food Sci. Nutr., pp. 1–27, 2021.

E. J. M. Jimenez et al., “Influence of anaerobic fermentation and yeast inoculation on the viability, chemical composition, and quality of coffee,†Food Biosci., vol. 51, p. 102218, 2023.




DOI: http://dx.doi.org/10.18517/ijaseit.13.5.18620

Refbacks

  • There are currently no refbacks.



Published by INSIGHT - Indonesian Society for Knowledge and Human Development